10/28/2016

Work on Skyline output for 2015 oyster data:

• Determine coefficient of variation for the retention times for each peptide across oyster replicates.
• Determine error by choosing 100 random peptides and counting how many times Skyline incorrectly matched peaks or did not get entire peak area in the peak picking borders.
• Learn MS stats (R-based package) to figure out differentially abundant peptides and proteins and make some nice plots.

Finalize wiki pages for experiments and begin a discussion with Steven, Emma, and Brooke regarding which samples we want to analyze for the 2016 experiments